Index

A

active or prognostic component add_default() (CIME.nmlgen.NamelistGenerator method) add_defaults_for_group() (CIME.nmlgen.NamelistGenerator method) add_failure() (CIME.expected_fails.ExpectedFails method) add_flag_to_cmd() (in module CIME.utils) add_mail_type_args() (in module CIME.utils) add_nmlcontents() (CIME.nmlgen.NamelistGenerator method)

analyze_build_log() (in module CIME.utils) append_case_status() (in module CIME.status) append_status() (in module CIME.status) append_status_cprnc_log() (in module CIME.compare_test_results) append_testlog() (in module CIME.status) apply_user_mods() (in module CIME.user_mod_support) archive directory (DOUT_S_ROOT) archive_old_test_data() (in module CIME.jenkins_generic_job)

B

baseline baseline failure batch_jobid() (in module CIME.utils) bless_history() (in module CIME.bless_test_results) bless_namelists() (in module CIME.bless_test_results)

bless_test_results() (in module CIME.bless_test_results) blessing build directory (EXEROOT) build_cime_component_lib() (in module CIME.buildlib) build_include_dirs_list() (in module CIME.user_mod_support) build_xcpl_nml() (in module CIME.buildnml)

C

case (CASE) case root (CASEROOT) case_build() (in module CIME.build) character_literal_to_string() (in module CIME.namelist) check_code() (in module CIME.code_checker) check_diff() (in module CIME.locked_files) check_lockedfile() (in module CIME.locked_files) check_lockedfiles() (in module CIME.locked_files) check_name() (in module CIME.utils) CIME root (CIMEROOT) CIME.aprun module CIME.baselines module CIME.bless_test_results module CIME.build module CIME.build_scripts module CIME.buildlib module CIME.buildnml module CIME.BuildTools module CIME.case module CIME.code_checker module CIME.compare_namelists module CIME.compare_test_results module CIME.config module CIME.cs_status module CIME.cs_status_creator module CIME.data module CIME.date module CIME.expected_fails module CIME.get_tests module CIME.get_timing module CIME.gitinterface module CIME.hist_utils module CIME.jenkins_generic_job module CIME.locked_files module CIME.namelist module CIME.nmlgen module CIME.non_py module CIME.ParamGen module CIME.provenance module CIME.scripts module

CIME.Servers module CIME.simple_compare module CIME.status module CIME.SystemTests module CIME.test_scheduler module CIME.test_status module CIME.Tools module CIME.user_mod_support module CIME.utils module CIME.wait_for_tests module CIME.XML module CIMEError clean() (in module CIME.build) cleanup_queue() (in module CIME.jenkins_generic_job) clear_folder() (in module CIME.utils) CmakeTmpBuildDir (class in CIME.build) compare_baseline() (in module CIME.hist_utils) compare_files() (in module CIME.simple_compare) compare_history() (in module CIME.compare_test_results) compare_namelist_files() (in module CIME.compare_namelists) compare_namelists() (in module CIME.compare_test_results) compare_runconfigfiles() (in module CIME.simple_compare) compare_test() (in module CIME.hist_utils) compare_test_results() (in module CIME.compare_test_results) component component set (COMPSET) compress_literal_list() (in module CIME.namelist) compute_total_time() (in module CIME.utils) Config (class in CIME.config) ConfigBase (class in CIME.config) configure_logging() (in module CIME.utils) confirm_group_is_empty() (CIME.nmlgen.NamelistGenerator method) convert_bool() (in module CIME.namelist) convert_to_babylonian_time() (in module CIME.utils) convert_to_seconds() (in module CIME.utils) convert_to_string() (in module CIME.utils) convert_to_type() (in module CIME.utils) convert_to_unknown_type() (in module CIME.utils) converter() (CIME.utils.IndentFormatter method) copy_globs() (in module CIME.utils) copy_histfiles() (in module CIME.hist_utils) copy_inputs_to_rundir() (in module CIME.buildnml) copy_local_macros_to_dir() (in module CIME.utils) copy_over_file() (in module CIME.utils) copyifnewer() (in module CIME.utils) coupler cprnc() (in module CIME.hist_utils) create_cdash_build_xml() (in module CIME.wait_for_tests) create_cdash_config_xml() (in module CIME.wait_for_tests) create_cdash_test_xml() (in module CIME.wait_for_tests) create_cdash_upload_xml() (in module CIME.wait_for_tests) create_cdash_xml() (in module CIME.wait_for_tests) create_cdash_xml_boiler() (in module CIME.wait_for_tests) create_cdash_xml_fakes() (in module CIME.wait_for_tests) create_cs_status() (in module CIME.cs_status_creator) create_namelist_infile() (in module CIME.buildnml) create_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method) create_stream_file_and_update_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method) cs_status() (in module CIME.cs_status)

D

data component date (class in CIME.date) delete_old_test_data() (in module CIME.jenkins_generic_job) delete_variable() (CIME.namelist.Namelist method)

deprecate_action() (in module CIME.utils) diff_lockedfile() (in module CIME.locked_files) does_file_have_string() (in module CIME.utils) driver

E

EnvironmentContext (class in CIME.utils) ESP expand_literal_list() (in module CIME.namelist)

expect() (in module CIME.utils) expected_fails_comment() (CIME.expected_fails.ExpectedFails method) ExpectedFails (class in CIME.expected_fails)

F

file_contains_python_function() (in module CIME.utils) filter_unicode() (in module CIME.utils) find_files() (in module CIME.utils) find_proc_id() (in module CIME.utils) find_system_test() (in module CIME.utils) findDiff() (in module CIME.simple_compare) fixup_sys_path() (in module CIME.utils)

forcing format() (CIME.utils.IndentFormatter method) format_time() (in module CIME.utils) formatException() (CIME.utils.IndentFormatter method) formatStack() (CIME.utils.IndentFormatter method) formatTime() (CIME.utils.IndentFormatter method) fortran_namelist_base_value() (in module CIME.namelist)

G

generate_baseline() (in module CIME.hist_utils) generate_makefile_macro() (in module CIME.build) generate_teststatus() (in module CIME.hist_utils) get_all_checkable_files() (in module CIME.code_checker) get_all_cime_models() (in module CIME.utils) get_aprun_cmd_for_case() (in module CIME.aprun) get_batch_script_for_job() (in module CIME.utils) get_build_groups() (in module CIME.get_tests) get_charge_account() (in module CIME.utils) get_cime_config() (in module CIME.utils) get_cime_default_driver() (in module CIME.utils) get_cime_root() (in module CIME.utils) get_config_path() (in module CIME.utils) get_current_branch() (in module CIME.utils) get_current_commit() (in module CIME.utils) get_current_submodule_status() (in module CIME.utils) get_default() (CIME.nmlgen.NamelistGenerator method) get_file_date() (in module CIME.date) get_fortran_name_only() (in module CIME.namelist) get_fortran_variable_indices() (in module CIME.namelist) get_full_test_name() (in module CIME.utils) get_full_test_names() (in module CIME.get_tests) get_group_names() (CIME.namelist.Namelist method) get_htmlroot() (in module CIME.utils) get_lids() (in module CIME.utils) get_logging_options() (in module CIME.utils) get_makefile_vars() (CIME.build.CmakeTmpBuildDir method) get_model() (in module CIME.utils) get_model_config_location_within_cime() (in module CIME.utils) get_model_config_root() (in module CIME.utils) get_nml_diff() (in module CIME.wait_for_tests) get_overall_test_status() (CIME.test_status.TestStatus method)

get_project() (in module CIME.utils) get_python_libs_location_within_cime() (in module CIME.utils) get_recommended_test_time() (in module CIME.get_tests) get_recommended_test_time_based_on_past() (in module CIME.provenance) get_schema_path() (in module CIME.utils) get_scripts_root() (in module CIME.utils) get_src_root() (in module CIME.utils) get_standard_cmake_args() (in module CIME.build) get_standard_makefile_args() (in module CIME.build) get_streams() (CIME.nmlgen.NamelistGenerator method) get_template_path() (in module CIME.utils) get_test_data() (in module CIME.get_tests) get_test_output() (in module CIME.wait_for_tests) get_test_phase() (in module CIME.wait_for_tests) get_test_success() (in module CIME.provenance) get_test_suite() (in module CIME.get_tests) get_test_suites() (in module CIME.get_tests) get_test_time() (in module CIME.wait_for_tests) get_time_in_seconds() (in module CIME.utils) get_timestamp() (in module CIME.utils) get_timing() (in module CIME.get_timing) get_tools_path() (in module CIME.utils) get_ts_synopsis() (in module CIME.hist_utils) get_umask() (in module CIME.utils) get_urlroot() (in module CIME.utils) get_value() (CIME.namelist.Namelist method) (CIME.nmlgen.NamelistGenerator method) get_variable_names() (CIME.namelist.Namelist method) get_variable_value() (CIME.namelist.Namelist method) GitInterface (class in CIME.gitinterface) grid (GRID) gunzip_existing_file() (in module CIME.utils) gzip_existing_file() (in module CIME.utils)

H

handle_old_test_data() (in module CIME.jenkins_generic_job)

history files

I

id_generator() (in module CIME.utils) import_and_run_sub_or_cmd() (in module CIME.utils) import_from_file() (in module CIME.utils) increment_non_pass_counts() (CIME.test_status.TestStatus method) indent_string() (in module CIME.utils) IndentFormatter (class in CIME.utils) infer_arch_from_tests() (in module CIME.get_tests) init_defaults() (CIME.nmlgen.NamelistGenerator method) initial files input data stream (DIN_LOC_ROOT)

instance() (CIME.config.Config class method) (CIME.config.ConfigBase class method) is_comp_standalone() (in module CIME.utils) is_hist_bless_needed() (in module CIME.bless_test_results) is_last_process_complete() (in module CIME.utils) is_locked() (in module CIME.locked_files) is_namelist_file() (in module CIME.compare_namelists) is_perf_test() (in module CIME.get_tests) is_python_executable() (in module CIME.utils) is_valid_fortran_name() (in module CIME.namelist) is_valid_fortran_namelist_literal() (in module CIME.namelist)

J

jenkins_generic_job() (in module CIME.jenkins_generic_job)

K

key_test_time() (in module CIME.get_tests)

L

literal_to_python_value() (in module CIME.namelist)

lock_file() (in module CIME.locked_files) ls_sorted_by_mtime() (in module CIME.utils)

M

mapping mask match_any() (in module CIME.utils) merge_literal_lists() (in module CIME.namelist) merge_nl() (CIME.namelist.Namelist method) Model Coupling Toolkit or MCT model_log() (in module CIME.utils) module CIME.aprun CIME.baselines CIME.bless_test_results CIME.build CIME.build_scripts CIME.buildlib CIME.buildnml CIME.BuildTools CIME.case CIME.code_checker CIME.compare_namelists CIME.compare_test_results CIME.config CIME.cs_status CIME.cs_status_creator CIME.data CIME.date CIME.expected_fails CIME.get_tests CIME.get_timing CIME.gitinterface CIME.hist_utils CIME.jenkins_generic_job CIME.locked_files CIME.namelist CIME.nmlgen CIME.non_py CIME.ParamGen CIME.provenance CIME.scripts CIME.Servers CIME.simple_compare CIME.status CIME.SystemTests CIME.test_scheduler CIME.test_status CIME.Tools CIME.user_mod_support CIME.utils CIME.wait_for_tests CIME.XML

N

Namelist (class in CIME.namelist) namelist files NamelistGenerator (class in CIME.nmlgen)

new_instance() (CIME.nmlgen.NamelistGenerator method) new_lid() (in module CIME.utils) normalize_case_id() (in module CIME.utils)

P

parse() (in module CIME.namelist) parse_args_and_handle_standard_logging_options() (in module CIME.utils) parse_input() (in module CIME.buildlib) (in module CIME.buildnml)

parse_test_name() (in module CIME.utils) phase_statuses_dump() (CIME.test_status.TestStatus method) post_build() (in module CIME.build) print_rst_header() (in module CIME.config) print_rst_table() (in module CIME.config)

Q

quote_string() (CIME.nmlgen.NamelistGenerator static method)

R

redirect_logger() (in module CIME.utils) redirect_stderr() (in module CIME.utils) redirect_stdout() (in module CIME.utils) redirect_stdout_stderr() (in module CIME.utils) regression test rename_all_hist_files() (in module CIME.hist_utils) rename_group() (CIME.nmlgen.NamelistGenerator method) reset_cime_config() (in module CIME.utils) resolution resolve_mail_type_args() (in module CIME.utils)

restart files rpointer files run directory (RUNDIR) run_and_log_case_status() (in module CIME.status) run_bld_cmd_ensure_logging() (in module CIME.utils) run_cmd() (in module CIME.utils) run_cmd_no_fail() (in module CIME.utils) run_gmake() (in module CIME.buildlib) run_sub_or_cmd() (in module CIME.utils) run_tests() (CIME.test_scheduler.TestScheduler method)

S

safe_copy() (in module CIME.utils) safe_recursive_copy() (in module CIME.utils) sandbox (SRCROOT) save_test_success() (in module CIME.provenance) save_test_time() (in module CIME.provenance) scan_for_test_ids() (in module CIME.jenkins_generic_job) set_abs_file_path() (CIME.nmlgen.NamelistGenerator method) set_logger_indent() (in module CIME.utils) set_model() (in module CIME.utils) set_status() (CIME.test_status.TestStatus method) set_up_signal_handlers() (in module CIME.wait_for_tests) set_value() (CIME.nmlgen.NamelistGenerator method)

set_variable_value() (CIME.namelist.Namelist method) setup_standard_logging_options() (in module CIME.utils) SharedArea (class in CIME.utils) signal_handler() (in module CIME.wait_for_tests) source modifications (CASEROOT/SourceMods) start_buffering_output() (in module CIME.utils) stop_buffering_output() (in module CIME.utils) string_in_list() (in module CIME.utils) string_to_character_literal() (in module CIME.namelist) stringify_bool() (in module CIME.utils) stub component suite_has_test() (in module CIME.get_tests) symlink_force() (in module CIME.utils)

T

tag TestScheduler (class in CIME.test_scheduler) TestStatus (class in CIME.test_status)

Timeout (class in CIME.utils) touch() (in module CIME.utils) transform_vars() (in module CIME.utils)

U

unit testing unlock_file() (in module CIME.locked_files) update_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method)

user namelist files (CASEROOT/user_nl_*) uses_kokkos() (in module CIME.build) usesTime() (CIME.utils.IndentFormatter method)

V

verbatim_success_msg() (in module CIME.utils)

W

wait_for_test() (in module CIME.wait_for_tests) wait_for_tests() (in module CIME.wait_for_tests) wait_for_tests_impl() (in module CIME.wait_for_tests) wait_for_unlocked() (in module CIME.utils) write() (CIME.namelist.Namelist method)

write_modelio_file() (CIME.nmlgen.NamelistGenerator method) write_nuopc() (CIME.namelist.Namelist method) write_nuopc_config_file() (CIME.nmlgen.NamelistGenerator method) write_nuopc_modelio_file() (CIME.nmlgen.NamelistGenerator method) write_output_file() (CIME.nmlgen.NamelistGenerator method) write_seq_maps() (CIME.nmlgen.NamelistGenerator method)

X

XML files

xml_to_make_variable() (in module CIME.build)