Source code for CIME.case.preview_namelists

"""
API for preview namelist
create_dirs and create_namelists are members of Class case from file case.py
"""

from CIME.XML.standard_module_setup import *
from CIME.utils import run_sub_or_cmd, safe_copy
import time, glob
logger = logging.getLogger(__name__)

[docs]def create_dirs(self): """ Make necessary directories for case """ # Get data from XML exeroot = self.get_value("EXEROOT") libroot = self.get_value("LIBROOT") incroot = self.get_value("INCROOT") rundir = self.get_value("RUNDIR") caseroot = self.get_value("CASEROOT") docdir = os.path.join(caseroot, "CaseDocs") dirs_to_make = [] models = self.get_values("COMP_CLASSES") for model in models: dirname = model.lower() dirs_to_make.append(os.path.join(exeroot, dirname, "obj")) dirs_to_make.extend([exeroot, libroot, incroot, rundir, docdir]) for dir_to_make in dirs_to_make: if (not os.path.isdir(dir_to_make) and not os.path.islink(dir_to_make)): try: logger.debug("Making dir '{}'".format(dir_to_make)) os.makedirs(dir_to_make) except OSError as e: # In a multithreaded situation, we may have lost a race to create this dir. # We do not want to crash if that's the case. if not os.path.isdir(dir_to_make): expect(False, "Could not make directory '{}', error: {}".format(dir_to_make, e)) # As a convenience write the location of the case directory in the bld and run directories for dir_ in (exeroot, rundir): with open(os.path.join(dir_,"CASEROOT"),"w+") as fd: fd.write(caseroot+"\n")
[docs]def create_namelists(self, component=None): """ Create component namelists """ self.flush() create_dirs(self) casebuild = self.get_value("CASEBUILD") caseroot = self.get_value("CASEROOT") rundir = self.get_value("RUNDIR") docdir = os.path.join(caseroot, "CaseDocs") # Load modules self.load_env() self.stage_refcase() logger.info("Creating component namelists") # Create namelists - must have cpl last in the list below # Note - cpl must be last in the loop below so that in generating its namelist, # it can use xml vars potentially set by other component's buildnml scripts models = self.get_values("COMP_CLASSES") models += [models.pop(0)] for model in models: model_str = model.lower() logger.info(" {} {} ".format(time.strftime("%Y-%m-%d %H:%M:%S"),model_str)) config_file = self.get_value("CONFIG_{}_FILE".format(model_str.upper())) config_dir = os.path.dirname(config_file) if model_str == "cpl": compname = "drv" else: compname = self.get_value("COMP_{}".format(model_str.upper())) if component is None or component == model_str or compname=="ufsatm": # first look in the case SourceMods directory cmd = os.path.join(caseroot, "SourceMods", "src."+compname, "buildnml") if os.path.isfile(cmd): logger.warning("\nWARNING: Using local buildnml file {}\n".format(cmd)) else: # otherwise look in the component config_dir cmd = os.path.join(config_dir, "buildnml") expect(os.path.isfile(cmd), "Could not find buildnml file for component {}".format(compname)) run_sub_or_cmd(cmd, (caseroot), "buildnml", (self, caseroot, compname), case=self) logger.debug("Finished creating component namelists, component {} models = {}".format(component, models)) # Save namelists to docdir if (not os.path.isdir(docdir)): os.makedirs(docdir) try: with open(os.path.join(docdir, "README"), "w") as fd: fd.write(" CESM Resolved Namelist Files\n For documentation only DO NOT MODIFY\n") except (OSError, IOError) as e: expect(False, "Failed to write {}/README: {}".format(docdir, e)) for cpglob in ["*_in_[0-9]*", "*modelio*", "*_in", "nuopc.runconfig", "*streams*txt*", "*streams.xml", "*stxt", "*maps.rc", "*cism.config*", "nuopc.runseq"]: for file_to_copy in glob.glob(os.path.join(rundir, cpglob)): logger.debug("Copy file from '{}' to '{}'".format(file_to_copy, docdir)) safe_copy(file_to_copy, docdir) # Copy over chemistry mechanism docs if they exist if (os.path.isdir(os.path.join(casebuild, "camconf"))): for file_to_copy in glob.glob(os.path.join(casebuild, "camconf", "*chem_mech*")): safe_copy(file_to_copy, docdir)