Index

A

active or prognostic component add_attributes() (CIME.XML.namelist_definition.NamelistDefinition method) add_child() (CIME.XML.generic_xml.GenericXML method) add_comment() (CIME.XML.env_mach_pes.EnvMachPes method) add_default() (CIME.nmlgen.NamelistGenerator method) add_elements_by_group() (CIME.XML.entry_id.EntryID method) add_failure() (CIME.expected_fails.ExpectedFails method) add_mail_type_args() (in module CIME.utils) add_nmlcontents() (CIME.nmlgen.NamelistGenerator method) add_result() (CIME.XML.test_reporter.TestReporter method) add_setting() (CIME.BuildTools.possiblevalues.PossibleValues method) add_settings_to_lists() (CIME.XML.compilerblock.CompilerBlock method) add_test() (CIME.XML.env_test.EnvTest method) (CIME.XML.testspec.TestSpec method) allow_error() (CIME.XML.env_mach_specific.EnvMachSpecific method) ambiguity_check() (CIME.BuildTools.possiblevalues.PossibleValues method) analyze_build_log() (in module CIME.utils) append_case_status() (in module CIME.utils) append_status() (in module CIME.utils)

append_status_cprnc_log() (in module CIME.compare_test_results) append_testlog() (in module CIME.utils) append_to_user_nl_files() (in module CIME.SystemTests.test_utils.user_nl_utils) append_variable() (CIME.BuildTools.macrowriterbase.MacroWriterBase method) apply_user_mods() (CIME.case.case.Case method) (in module CIME.user_mod_support) Archive (class in CIME.XML.archive) archive directory (DOUT_S_ROOT) archive_last_restarts() (CIME.case.case.Case method) (in module CIME.case.case_st_archive) ArchiveBase (class in CIME.XML.archive_base) arguments() (CIME.tests.SystemTests.test_system_tests_compare_two.Call property) assert_core_phases() (CIME.tests.custom_assertions_test_status.CustomAssertionsTestStatus method) assert_num_expected_unexpected_fails() (CIME.tests.custom_assertions_test_status.CustomAssertionsTestStatus method) assert_phase_absent() (CIME.tests.custom_assertions_test_status.CustomAssertionsTestStatus method) assert_status_of_phase() (CIME.tests.custom_assertions_test_status.CustomAssertionsTestStatus method) assertFileContentsEqual() (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method) assertResults() (CIME.tests.test_user_mod_support.TestUserModSupport method) attrib() (CIME.XML.generic_xml.GenericXML method)

B

baseline baseline failure Batch (class in CIME.XML.batch) batch_jobid() (in module CIME.utils) bless_history() (in module CIME.bless_test_results) bless_namelists() (in module CIME.bless_test_results) bless_test_results() (in module CIME.bless_test_results) blessing build directory (EXEROOT) build() (CIME.SystemTests.system_tests_common.SystemTestsCommon method) build_cime_component_lib() (in module CIME.buildlib) build_include_dirs_list() (in module CIME.user_mod_support) build_indv() (CIME.SystemTests.system_tests_common.SystemTestsCommon method) build_phase() (CIME.SystemTests.funit.FUNIT method) (CIME.SystemTests.hommebaseclass.HommeBase method) (CIME.SystemTests.icp.ICP method) (CIME.SystemTests.system_tests_common.FakeTest method) (CIME.SystemTests.system_tests_common.SystemTestsCommon method) (CIME.SystemTests.system_tests_common.TESTBUILDFAIL method) (CIME.SystemTests.system_tests_common.TESTMEMLEAKFAIL method) (CIME.SystemTests.system_tests_common.TESTMEMLEAKPASS method) (CIME.SystemTests.system_tests_common.TESTRUNDIFF method) (CIME.SystemTests.system_tests_common.TESTRUNFAIL method) (CIME.SystemTests.system_tests_common.TESTRUNPASS method) (CIME.SystemTests.system_tests_common.TESTRUNSLOWPASS method) (CIME.SystemTests.system_tests_common.TESTRUNUSERXMLCHANGE method) (CIME.SystemTests.system_tests_common.TESTTESTDIFF method) (CIME.SystemTests.system_tests_compare_two.SystemTestsCompareTwo method)

build_xcpl_nml() (in module CIME.buildnml)

C

Call (class in CIME.tests.SystemTests.test_system_tests_compare_two) cancel_batch_jobs() (CIME.case.case.Case method) cancel_job() (CIME.XML.env_batch.EnvBatch method) case (CASE) Case (class in CIME.case.case) case root (CASEROOT) case_build() (in module CIME.build) case_cmpgen_namelists() (CIME.case.case.Case method) (in module CIME.case.case_cmpgen_namelists) case_run() (CIME.case.case.Case method) (in module CIME.case.case_run) case_setup() (CIME.case.case.Case method) (CIME.tests.case_fake.CaseFake method) (in module CIME.case.case_setup) case_st_archive() (CIME.case.case.Case method) (in module CIME.case.case_st_archive) case_test() (CIME.case.case.Case method) (in module CIME.case.case_test) CaseFake (class in CIME.tests.case_fake) CaseInsensitiveDict (class in CIME.XML.namelist_definition) change_file() (CIME.XML.env_base.EnvBase method) (CIME.XML.generic_xml.GenericXML method) character_literal_to_string() (in module CIME.namelist) check_all_input_data() (CIME.case.case.Case method) (in module CIME.case.check_input_data) check_case() (CIME.case.case.Case method) (in module CIME.case.case_submit) check_code() (in module CIME.code_checker) check_DA_settings() (CIME.case.case.Case method) (in module CIME.case.case_submit) check_for_python() (in module CIME.utils) check_if_comp_var() (CIME.case.case.Case method) (CIME.XML.entry_id.EntryID method) (CIME.XML.env_base.EnvBase method) (CIME.XML.pio.PIO method) check_input_data() (CIME.case.case.Case method) (in module CIME.case.check_input_data) check_lockedfile() (CIME.case.case.Case method) (in module CIME.case.check_lockedfiles) check_lockedfiles() (CIME.case.case.Case method) (in module CIME.case.check_lockedfiles) check_minimum_python_version() (in module CIME.utils) check_name() (in module CIME.utils) check_pelayouts_require_rebuild() (CIME.case.case.Case method) (in module CIME.case.check_lockedfiles) check_timestamp() (CIME.XML.generic_xml.GenericXML method) check_timestamps() (CIME.case.case.Case method) CIME module CIME root (CIMEROOT) CIME.aprun module CIME.bless_test_results module CIME.build module CIME.buildlib module CIME.buildnml module CIME.BuildTools module CIME.BuildTools.cmakemacroswriter module CIME.BuildTools.configure module CIME.BuildTools.macroconditiontree module CIME.BuildTools.macrowriterbase module CIME.BuildTools.makemacroswriter module CIME.BuildTools.possiblevalues module CIME.BuildTools.valuesetting module CIME.case module CIME.case.case module CIME.case.case_clone module CIME.case.case_cmpgen_namelists module CIME.case.case_run module CIME.case.case_setup module CIME.case.case_st_archive module CIME.case.case_submit module CIME.case.case_test module CIME.case.check_input_data module CIME.case.check_lockedfiles module CIME.case.preview_namelists module CIME.code_checker module CIME.compare_namelists module CIME.compare_test_results module CIME.cs_status module CIME.cs_status_creator module CIME.date module CIME.expected_fails module CIME.get_timing module CIME.hist_utils module CIME.locked_files module CIME.namelist module CIME.nmlgen module CIME.provenance module CIME.Servers module CIME.Servers.ftp module CIME.Servers.generic_server module CIME.Servers.gftp module CIME.Servers.svn module CIME.Servers.wget module CIME.simple_compare module CIME.SystemTests module CIME.SystemTests.dae module CIME.SystemTests.eri module CIME.SystemTests.erio module CIME.SystemTests.erp module CIME.SystemTests.err module CIME.SystemTests.erri module CIME.SystemTests.ers module CIME.SystemTests.ers2 module CIME.SystemTests.ert module CIME.SystemTests.funit module CIME.SystemTests.homme module CIME.SystemTests.hommebaseclass module CIME.SystemTests.hommebfb module CIME.SystemTests.icp module CIME.SystemTests.irt module CIME.SystemTests.ldsta module CIME.SystemTests.mcc module CIME.SystemTests.nck module CIME.SystemTests.ncr module CIME.SystemTests.nodefail module CIME.SystemTests.pea module CIME.SystemTests.pem module CIME.SystemTests.pet module CIME.SystemTests.pfs module CIME.SystemTests.pre module CIME.SystemTests.rep module CIME.SystemTests.restart_tests module CIME.SystemTests.seq module CIME.SystemTests.sms module

CIME.SystemTests.system_tests_common module CIME.SystemTests.system_tests_compare_two module CIME.SystemTests.test_utils module CIME.SystemTests.test_utils.user_nl_utils module CIME.test_scheduler module CIME.test_status module CIME.test_utils module CIME.tests module CIME.tests.case_fake module CIME.tests.custom_assertions_test_status module CIME.tests.SystemTests module CIME.tests.SystemTests.test_system_tests_compare_two module CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output module CIME.tests.SystemTests.test_utils module CIME.tests.SystemTests.test_utils.test_user_nl_utils module CIME.tests.test_case_fake module CIME.tests.test_cs_status module CIME.tests.test_custom_assertions_test_status module CIME.tests.test_test_status module CIME.tests.test_user_mod_support module CIME.tests.test_utils module CIME.tests.XML module CIME.tests.XML.test_expected_fails_file module CIME.user_mod_support module CIME.utils module CIME.wait_for_tests module CIME.XML module CIME.XML.archive module CIME.XML.archive_base module CIME.XML.batch module CIME.XML.compilerblock module CIME.XML.compilers module CIME.XML.component module CIME.XML.compsets module CIME.XML.entry_id module CIME.XML.env_archive module CIME.XML.env_base module CIME.XML.env_batch module CIME.XML.env_build module CIME.XML.env_case module CIME.XML.env_mach_pes module CIME.XML.env_mach_specific module CIME.XML.env_run module CIME.XML.env_test module CIME.XML.env_workflow module CIME.XML.expected_fails_file module CIME.XML.files module CIME.XML.generic_xml module CIME.XML.grids module CIME.XML.headers module CIME.XML.inputdata module CIME.XML.machines module CIME.XML.namelist_definition module CIME.XML.pes module CIME.XML.pio module CIME.XML.standard_module_setup module CIME.XML.stream module CIME.XML.test_reporter module CIME.XML.testlist module CIME.XML.tests module CIME.XML.testspec module CIME.XML.workflow module CIMEError clean() (in module CIME.build) clean_build() (CIME.SystemTests.system_tests_common.SystemTestsCommon method) clean_groups() (CIME.namelist.Namelist method) clean_streams() (CIME.nmlgen.NamelistGenerator method) clean_up_lookups() (CIME.case.case.Case method) cleanupnode() (CIME.XML.entry_id.EntryID method) (CIME.XML.env_base.EnvBase method) (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_test.EnvTest method) CMakeMacroWriter (class in CIME.BuildTools.cmakemacroswriter) compare_baseline() (in module CIME.hist_utils) compare_env_run() (CIME.SystemTests.system_tests_common.SystemTestsCommon method) compare_files() (in module CIME.simple_compare) compare_history() (in module CIME.compare_test_results) compare_namelist_files() (in module CIME.compare_namelists) compare_namelists() (in module CIME.compare_test_results) compare_runconfigfiles() (in module CIME.simple_compare) compare_test() (in module CIME.hist_utils) compare_test_results() (in module CIME.compare_test_results) compare_xml() (CIME.XML.entry_id.EntryID method) (CIME.XML.env_batch.EnvBatch method) CompilerBlock (class in CIME.XML.compilerblock) Compilers (class in CIME.XML.compilers) component Component (class in CIME.XML.component) component set (COMPSET) compress_literal_list() (in module CIME.namelist) Compsets (class in CIME.XML.compsets) compute_total_time() (in module CIME.utils) configure() (CIME.case.case.Case method) (in module CIME.BuildTools.configure) convert_to_babylonian_time() (in module CIME.utils) convert_to_seconds() (in module CIME.utils) convert_to_string() (in module CIME.utils) convert_to_type() (in module CIME.utils) convert_to_unknown_type() (in module CIME.utils) copy() (CIME.case.case.Case method) (CIME.tests.case_fake.CaseFake method) (CIME.XML.generic_xml.GenericXML method) copy_case1_restarts_to_case2() (CIME.SystemTests.system_tests_compare_two.SystemTestsCompareTwo method) copy_histfiles() (in module CIME.hist_utils) copy_inputs_to_rundir() (in module CIME.buildnml) copyifnewer() (in module CIME.utils) coupler cprnc() (in module CIME.hist_utils) create() (CIME.case.case.Case method) create_caseroot() (CIME.case.case.Case method) create_cdash_build_xml() (in module CIME.wait_for_tests) create_cdash_config_xml() (in module CIME.wait_for_tests) create_cdash_test_xml() (in module CIME.wait_for_tests) create_cdash_upload_xml() (in module CIME.wait_for_tests) create_cdash_xml() (in module CIME.wait_for_tests) create_cdash_xml_boiler() (in module CIME.wait_for_tests) create_cdash_xml_fakes() (in module CIME.wait_for_tests) create_clone() (CIME.case.case.Case method) (CIME.tests.case_fake.CaseFake method) (in module CIME.case.case_clone) create_cs_status() (in module CIME.cs_status_creator) create_dirs() (CIME.case.case.Case method) (in module CIME.case.preview_namelists) create_file_in_rundir2() (CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output.TestLinkToCase2Output method) create_job_groups() (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_workflow.EnvWorkflow method) create_namelist_infile() (in module CIME.buildnml) create_namelists() (CIME.case.case.Case method) (in module CIME.case.preview_namelists) create_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method) create_stream_file_and_update_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method) create_test_dir() (CIME.tests.test_cs_status.TestCsStatus method) create_test_status_core_passes() (CIME.tests.test_cs_status.TestCsStatus static method) createUserMod() (CIME.tests.test_user_mod_support.TestUserModSupport method) cs_status() (in module CIME.cs_status) CustomAssertionsTestStatus (class in CIME.tests.custom_assertions_test_status)

D

DAE (class in CIME.SystemTests.dae) data component date (class in CIME.date) day() (CIME.date.date method) delete_variable() (CIME.namelist.Namelist method)

dependencies() (CIME.BuildTools.possiblevalues.PossibleValues method) dict_to_namelist() (CIME.XML.namelist_definition.NamelistDefinition method) DISABLE_CACHING (CIME.XML.generic_xml.GenericXML attribute) does_file_have_string() (in module CIME.utils) driver

E

end_ifeq() (CIME.BuildTools.cmakemacroswriter.CMakeMacroWriter method) (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (CIME.BuildTools.makemacroswriter.MakeMacroWriter method) EntryID (class in CIME.XML.entry_id) EnvArchive (class in CIME.XML.env_archive) EnvBase (class in CIME.XML.env_base) EnvBatch (class in CIME.XML.env_batch) EnvBuild (class in CIME.XML.env_build) EnvCase (class in CIME.XML.env_case) environment_variable_string() (CIME.BuildTools.cmakemacroswriter.CMakeMacroWriter method) (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (CIME.BuildTools.makemacroswriter.MakeMacroWriter method) EnvironmentContext (class in CIME.utils) EnvMachPes (class in CIME.XML.env_mach_pes) EnvMachSpecific (class in CIME.XML.env_mach_specific) EnvRun (class in CIME.XML.env_run)

EnvTest (class in CIME.XML.env_test) EnvWorkflow (class in CIME.XML.env_workflow) ERI (class in CIME.SystemTests.eri) ERIO (class in CIME.SystemTests.erio) ERP (class in CIME.SystemTests.erp) ERR (class in CIME.SystemTests.err) ERRI (class in CIME.SystemTests.erri) ERS (class in CIME.SystemTests.ers) ERS2 (class in CIME.SystemTests.ers2) ERT (class in CIME.SystemTests.ert) ESP expand_literal_list() (in module CIME.namelist) expect() (in module CIME.utils) expected_fails_comment() (CIME.expected_fails.ExpectedFails method) ExpectedFails (class in CIME.expected_fails) ExpectedFailsFile (class in CIME.XML.expected_fails_file)

F

FakeCase (class in CIME.BuildTools.configure) FakeTest (class in CIME.SystemTests.system_tests_common) fileexists() (CIME.Servers.ftp.FTP method) (CIME.Servers.generic_server.GenericServer method) (CIME.Servers.gftp.GridFTP method) (CIME.Servers.svn.SVN method) (CIME.Servers.wget.WGET method) Files (class in CIME.XML.files) filter_unicode() (in module CIME.utils) find_files() (in module CIME.utils) find_pes_layout() (CIME.XML.pes.Pes method) find_proc_id() (in module CIME.utils)

find_system_test() (in module CIME.utils) findDiff() (in module CIME.simple_compare) flush() (CIME.case.case.Case method) (CIME.test_status.TestStatus method) (CIME.tests.case_fake.CaseFake method) forcing format() (CIME.utils.IndentFormatter method) format_time() (in module CIME.utils) fortran_namelist_base_value() (in module CIME.namelist) FTP (class in CIME.Servers.ftp) ftp_login() (CIME.Servers.ftp.FTP class method) FUNIT (class in CIME.SystemTests.funit)

G

generate_baseline() (in module CIME.hist_utils) generate_teststatus() (in module CIME.hist_utils) GenericServer (class in CIME.Servers.generic_server) GenericXML (class in CIME.XML.generic_xml) GenericXML.CacheEntry (class in CIME.XML.generic_xml) get() (CIME.XML.generic_xml.GenericXML method) (CIME.XML.namelist_definition.CaseInsensitiveDict method) get_all_checkable_files() (in module CIME.code_checker) get_all_cime_models() (in module CIME.utils) get_all_config_archive_files() (CIME.XML.archive.Archive method) get_all_hist_files() (CIME.XML.archive_base.ArchiveBase method) get_all_queues() (CIME.XML.env_batch.EnvBatch method) get_aprun_cmd_for_case() (in module CIME.aprun) get_batch_directives() (CIME.XML.env_batch.EnvBatch method) get_batch_jobs() (CIME.case.case.Case method) (CIME.XML.batch.Batch method) get_batch_mail_type() (CIME.XML.env_batch.EnvBatch method) get_batch_script_for_job() (in module CIME.utils) get_batch_system() (CIME.XML.batch.Batch method) get_batch_system_type() (CIME.XML.env_batch.EnvBatch method) get_build_threaded() (CIME.case.case.Case method) get_case_root() (CIME.case.case.Case method) get_caseroots() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) get_charge_account() (in module CIME.utils) get_child() (CIME.XML.generic_xml.GenericXML method) (CIME.XML.machines.Machines method) get_child_content() (CIME.XML.entry_id.EntryID method) get_children() (CIME.XML.env_base.EnvBase method) (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_workflow.EnvWorkflow method) (CIME.XML.generic_xml.GenericXML method) get_cime_config() (in module CIME.utils) get_cime_default_driver() (in module CIME.utils) get_cime_location_within_e3sm() (in module CIME.utils) get_cime_root() (in module CIME.utils) get_comment() (CIME.test_status.TestStatus method) get_compare_phase_name() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) get_compiler() (CIME.XML.compilers.Compilers method) get_components() (CIME.XML.files.Files method) get_compset_components() (CIME.case.case.Case method) get_compset_longnames() (CIME.XML.compsets.Compsets method) get_compset_match() (CIME.XML.compsets.Compsets method) get_compset_var_settings() (CIME.case.case.Case method) (CIME.XML.compsets.Compsets method) get_current_branch() (in module CIME.utils) get_current_commit() (in module CIME.utils) get_default() (CIME.nmlgen.NamelistGenerator method) get_default_compiler() (CIME.XML.machines.Machines method) get_default_MPIlib() (CIME.XML.machines.Machines method) get_default_queue() (CIME.XML.env_batch.EnvBatch method) get_default_value() (CIME.XML.entry_id.EntryID method) (CIME.XML.namelist_definition.NamelistDefinition method) get_defaults() (CIME.XML.pio.PIO method) get_description() (CIME.XML.component.Component method) (CIME.XML.entry_id.EntryID method) get_e3sm_root() (in module CIME.utils) get_element_text() (CIME.XML.generic_xml.GenericXML method) get_elements_from_child_content() (CIME.XML.entry_id.EntryID method) get_entries() (CIME.XML.env_archive.EnvArchive method) get_entry() (CIME.XML.archive_base.ArchiveBase method) get_entry_info() (CIME.XML.env_archive.EnvArchive method) get_entry_nodes() (CIME.XML.namelist_definition.NamelistDefinition method) get_entry_value() (CIME.XML.archive_base.ArchiveBase method) get_env() (CIME.case.case.Case method) get_expected_fails() (CIME.XML.expected_fails_file.ExpectedFailsFile method) get_field_from_list() (CIME.XML.machines.Machines method) get_file_date() (in module CIME.date) get_first_child_nodes() (CIME.XML.machines.Machines method) get_first_job() (CIME.case.case.Case method) get_forcing_description() (CIME.XML.component.Component method) get_fortran_name_only() (in module CIME.namelist) get_fortran_variable_indices() (in module CIME.namelist) get_full_test_name() (in module CIME.utils) get_grid_info() (CIME.XML.grids.Grids method) get_group() (CIME.XML.namelist_definition.NamelistDefinition method) get_group_names() (CIME.namelist.Namelist method) get_group_variables() (CIME.namelist.Namelist method) (CIME.nmlgen.NamelistGenerator method) get_groups() (CIME.XML.entry_id.EntryID method) get_header_node() (CIME.XML.headers.Headers method) get_hist_file_extensions() (CIME.XML.archive_base.ArchiveBase method) get_histfiles_for_restarts() (in module CIME.case.case_st_archive) get_htmlroot() (in module CIME.utils) get_id() (CIME.XML.generic_xml.GenericXML method) get_input_pathname() (CIME.XML.namelist_definition.NamelistDefinition method) get_job_id() (CIME.XML.env_batch.EnvBatch method) get_job_info() (CIME.case.case.Case method) get_job_overrides() (CIME.XML.env_batch.EnvBatch method) get_job_specs() (CIME.XML.env_workflow.EnvWorkflow method) get_jobs() (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_workflow.EnvWorkflow method) get_latest_cpl_log() (CIME.case.case.Case method) get_latest_hist_files() (CIME.XML.archive_base.ArchiveBase method) get_lids() (in module CIME.utils) get_logging_options() (in module CIME.utils) get_machine_name() (CIME.XML.machines.Machines method) get_machines_dir() (CIME.XML.machines.Machines method) get_max_thread_count() (CIME.XML.env_mach_pes.EnvMachPes method) get_model() (in module CIME.utils) get_model_config_location_within_cime() (in module CIME.utils) get_model_config_root() (in module CIME.utils) get_module_system_cmd_path() (CIME.XML.env_mach_specific.EnvMachSpecific method) get_module_system_init_path() (CIME.XML.env_mach_specific.EnvMachSpecific method) get_module_system_type() (CIME.XML.env_mach_specific.EnvMachSpecific method) get_mpirun() (CIME.XML.env_mach_specific.EnvMachSpecific method) get_mpirun_cmd() (CIME.case.case.Case method)

get_name() (CIME.test_status.TestStatus method) get_next_server() (CIME.XML.inputdata.Inputdata method) get_node_element_info() (CIME.XML.entry_id.EntryID method) get_node_names() (CIME.XML.machines.Machines method) get_nodes_by_id() (CIME.XML.entry_id.EntryID method) (CIME.XML.env_base.EnvBase method) get_optional_batch_node() (CIME.XML.batch.Batch method) get_optional_child() (CIME.XML.generic_xml.GenericXML method) get_optional_compiler_node() (CIME.XML.compilers.Compilers method) get_overall_test_status() (CIME.test_status.TestStatus method) get_per_stream_entries() (CIME.XML.namelist_definition.NamelistDefinition method) get_primary_component() (CIME.case.case.Case method) get_primary_job() (CIME.case.case.Case method) get_project() (in module CIME.utils) get_python_libs_location_within_cime() (in module CIME.utils) get_python_libs_root() (in module CIME.utils) get_queue_specs() (CIME.XML.env_batch.EnvBatch method) get_raw_record() (CIME.XML.generic_xml.GenericXML method) get_recommended_test_time_based_on_past() (in module CIME.provenance) get_record_fields() (CIME.case.case.Case method) get_resolved_value() (CIME.case.case.Case method) (CIME.XML.generic_xml.GenericXML method) get_rest_file_extensions() (CIME.XML.archive_base.ArchiveBase method) get_rpointer_contents() (CIME.XML.env_archive.EnvArchive method) get_schema() (CIME.XML.files.Files method) get_scripts_location_within_cime() (in module CIME.utils) get_scripts_root() (in module CIME.utils) get_settings_for_phase() (CIME.XML.env_test.EnvTest method) get_spare_nodes() (CIME.XML.env_mach_pes.EnvMachPes method) get_standard_cmake_args() (in module CIME.build) get_standard_makefile_args() (in module CIME.build) get_status() (CIME.test_status.TestStatus method) (CIME.XML.env_batch.EnvBatch method) get_step_phase_cnt() (CIME.XML.env_test.EnvTest method) get_streams() (CIME.nmlgen.NamelistGenerator method) get_submit_args() (CIME.XML.env_batch.EnvBatch method) get_suffix() (CIME.XML.machines.Machines method) get_tasks_per_node() (CIME.XML.env_mach_pes.EnvMachPes method) get_test_node() (CIME.XML.tests.Tests method) get_test_output() (in module CIME.wait_for_tests) get_test_parameter() (CIME.XML.env_test.EnvTest method) get_test_spec_dir() (CIME.SystemTests.funit.FUNIT method) get_test_status_files() (in module CIME.test_utils) get_test_success() (in module CIME.provenance) get_test_time() (in module CIME.wait_for_tests) get_testnames() (CIME.test_scheduler.TestScheduler method) get_tests() (CIME.XML.testlist.Testlist method) get_tests_from_xml() (in module CIME.test_utils) get_time_in_seconds() (in module CIME.utils) get_timestamp() (in module CIME.utils) get_timing() (in module CIME.get_timing) get_total_nodes() (CIME.XML.env_mach_pes.EnvMachPes method) get_total_tasks() (CIME.XML.env_mach_pes.EnvMachPes method) get_ts_synopsis() (in module CIME.hist_utils) get_type_info() (CIME.case.case.Case method) (CIME.XML.entry_id.EntryID method) (CIME.XML.env_archive.EnvArchive method) (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_mach_specific.EnvMachSpecific method) (CIME.XML.env_workflow.EnvWorkflow method) get_umask() (in module CIME.utils) get_urlroot() (in module CIME.utils) get_valid_model_components() (CIME.XML.component.Component method) get_valid_value_string() (CIME.XML.entry_id.EntryID method) get_valid_values() (CIME.XML.entry_id.EntryID method) get_value() (CIME.BuildTools.configure.FakeCase method) (CIME.case.case.Case method) (CIME.namelist.Namelist method) (CIME.nmlgen.NamelistGenerator method) (CIME.tests.case_fake.CaseFake method) (CIME.XML.batch.Batch method) (CIME.XML.compilers.Compilers method) (CIME.XML.component.Component method) (CIME.XML.compsets.Compsets method) (CIME.XML.entry_id.EntryID method) (CIME.XML.env_base.EnvBase method) (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_mach_pes.EnvMachPes method) (CIME.XML.env_test.EnvTest method) (CIME.XML.env_workflow.EnvWorkflow method) (CIME.XML.files.Files method) (CIME.XML.generic_xml.GenericXML method) (CIME.XML.machines.Machines method) (CIME.XML.stream.Stream method) get_value_match() (CIME.XML.entry_id.EntryID method) (CIME.XML.namelist_definition.NamelistDefinition method) get_values() (CIME.case.case.Case method) (CIME.XML.entry_id.EntryID method) (CIME.XML.generic_xml.GenericXML method) get_variable_names() (CIME.namelist.Namelist method) get_variable_value() (CIME.namelist.Namelist method) get_version() (CIME.XML.generic_xml.GenericXML method) get_workflow_jobs() (CIME.XML.workflow.Workflow method) getdirectory() (CIME.Servers.ftp.FTP method) (CIME.Servers.gftp.GridFTP method) (CIME.Servers.svn.SVN method) (CIME.Servers.wget.WGET method) getfile() (CIME.Servers.ftp.FTP method) (CIME.Servers.generic_server.GenericServer method) (CIME.Servers.gftp.GridFTP method) (CIME.Servers.svn.SVN method) (CIME.Servers.wget.WGET method) grid (GRID) GridFTP (class in CIME.Servers.gftp) Grids (class in CIME.XML.grids) gunzip_existing_file() (in module CIME.utils) gzip_existing_file() (in module CIME.utils)

H

has() (CIME.XML.generic_xml.GenericXML method) has_batch_system() (CIME.XML.machines.Machines method) has_special_case() (CIME.BuildTools.valuesetting.ValueSetting method) Headers (class in CIME.XML.headers) history files

hms_to_second() (CIME.date.date static method) HOMME (class in CIME.SystemTests.homme) HommeBase (class in CIME.SystemTests.hommebaseclass) HOMMEBFB (class in CIME.SystemTests.hommebfb) hour() (CIME.date.date method)

I

ICP (class in CIME.SystemTests.icp) id_generator() (in module CIME.utils) increment_non_pass_counts() (CIME.test_status.TestStatus method) indent_increment (CIME.BuildTools.macrowriterbase.MacroWriterBase attribute) indent_left() (CIME.BuildTools.macrowriterbase.MacroWriterBase method) indent_right() (CIME.BuildTools.macrowriterbase.MacroWriterBase method) indent_string() (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (in module CIME.utils) IndentFormatter (class in CIME.utils) init_defaults() (CIME.nmlgen.NamelistGenerator method) initial files initialize_derived_attributes() (CIME.case.case.Case method) input data stream (DIN_LOC_ROOT)

Inputdata (class in CIME.XML.inputdata) invalidate() (CIME.XML.generic_xml.GenericXML class method) IRT (class in CIME.SystemTests.irt) is_ambiguous_with() (CIME.BuildTools.valuesetting.ValueSetting method) is_last_process_complete() (in module CIME.utils) is_locked() (in module CIME.locked_files) is_namelist_file() (in module CIME.compare_namelists) is_python_executable() (in module CIME.utils) is_save_timing_dir_project() (CIME.case.case.Case method) is_valid_compiler() (CIME.XML.machines.Machines method) is_valid_fortran_name() (in module CIME.namelist) is_valid_fortran_namelist_literal() (in module CIME.namelist) is_valid_MPIlib() (CIME.XML.machines.Machines method) is_valid_value() (CIME.XML.namelist_definition.NamelistDefinition method)

L

LDSTA (class in CIME.SystemTests.ldsta) list_available_machines() (CIME.XML.machines.Machines method) list_modules() (CIME.XML.env_mach_specific.EnvMachSpecific method) literal_to_python_value() (in module CIME.namelist) load_env() (CIME.case.case.Case method) (CIME.tests.case_fake.CaseFake method) (CIME.XML.env_mach_specific.EnvMachSpecific method)

lock() (CIME.XML.generic_xml.GenericXML method) lock_file() (in module CIME.locked_files) ls_sorted_by_mtime() (in module CIME.utils)

M

Machines (class in CIME.XML.machines) MacroConditionTree (class in CIME.BuildTools.macroconditiontree) MacroWriterBase (class in CIME.BuildTools.macrowriterbase) make_all_batch_files() (CIME.XML.env_batch.EnvBatch method) make_batch_script() (CIME.XML.env_batch.EnvBatch method) make_child() (CIME.XML.generic_xml.GenericXML method) make_child_comment() (CIME.XML.generic_xml.GenericXML method) make_env_mach_specific_file() (CIME.XML.env_mach_specific.EnvMachSpecific method) make_rundir() (CIME.tests.case_fake.CaseFake method) MakeMacroWriter (class in CIME.BuildTools.makemacroswriter) mapping mask match_any() (in module CIME.utils) matches_machine() (CIME.XML.compilerblock.CompilerBlock method) MCC (class in CIME.SystemTests.mcc) md5() (in module CIME.case.check_input_data) merge() (CIME.BuildTools.macroconditiontree.MacroConditionTree method) merge_literal_lists() (in module CIME.namelist) merge_nl() (CIME.namelist.Namelist method) merge_optional_trees() (in module CIME.BuildTools.macroconditiontree) method() (CIME.tests.SystemTests.test_system_tests_compare_two.Call property) minute() (CIME.date.date method) Model Coupling Toolkit or MCT model_log() (in module CIME.utils) modtime() (CIME.XML.generic_xml.GenericXML.CacheEntry property) module CIME CIME.aprun CIME.bless_test_results CIME.build CIME.buildlib CIME.buildnml CIME.BuildTools CIME.BuildTools.cmakemacroswriter CIME.BuildTools.configure CIME.BuildTools.macroconditiontree CIME.BuildTools.macrowriterbase CIME.BuildTools.makemacroswriter CIME.BuildTools.possiblevalues CIME.BuildTools.valuesetting CIME.case CIME.case.case CIME.case.case_clone CIME.case.case_cmpgen_namelists CIME.case.case_run CIME.case.case_setup CIME.case.case_st_archive CIME.case.case_submit CIME.case.case_test CIME.case.check_input_data CIME.case.check_lockedfiles CIME.case.preview_namelists CIME.code_checker CIME.compare_namelists CIME.compare_test_results CIME.cs_status CIME.cs_status_creator CIME.date CIME.expected_fails CIME.get_timing CIME.hist_utils CIME.locked_files CIME.namelist CIME.nmlgen CIME.provenance CIME.Servers CIME.Servers.ftp CIME.Servers.generic_server CIME.Servers.gftp CIME.Servers.svn CIME.Servers.wget CIME.simple_compare CIME.SystemTests CIME.SystemTests.dae CIME.SystemTests.eri CIME.SystemTests.erio CIME.SystemTests.erp CIME.SystemTests.err CIME.SystemTests.erri CIME.SystemTests.ers CIME.SystemTests.ers2 CIME.SystemTests.ert CIME.SystemTests.funit CIME.SystemTests.homme CIME.SystemTests.hommebaseclass CIME.SystemTests.hommebfb CIME.SystemTests.icp CIME.SystemTests.irt CIME.SystemTests.ldsta CIME.SystemTests.mcc CIME.SystemTests.nck CIME.SystemTests.ncr CIME.SystemTests.nodefail CIME.SystemTests.pea CIME.SystemTests.pem CIME.SystemTests.pet CIME.SystemTests.pfs CIME.SystemTests.pre CIME.SystemTests.rep CIME.SystemTests.restart_tests CIME.SystemTests.seq CIME.SystemTests.sms CIME.SystemTests.system_tests_common CIME.SystemTests.system_tests_compare_two CIME.SystemTests.test_utils CIME.SystemTests.test_utils.user_nl_utils CIME.test_scheduler CIME.test_status CIME.test_utils CIME.tests CIME.tests.case_fake CIME.tests.custom_assertions_test_status CIME.tests.SystemTests CIME.tests.SystemTests.test_system_tests_compare_two CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output CIME.tests.SystemTests.test_utils CIME.tests.SystemTests.test_utils.test_user_nl_utils CIME.tests.test_case_fake CIME.tests.test_cs_status CIME.tests.test_custom_assertions_test_status CIME.tests.test_test_status CIME.tests.test_user_mod_support CIME.tests.test_utils CIME.tests.XML CIME.tests.XML.test_expected_fails_file CIME.user_mod_support CIME.utils CIME.wait_for_tests CIME.XML CIME.XML.archive CIME.XML.archive_base CIME.XML.batch CIME.XML.compilerblock CIME.XML.compilers CIME.XML.component CIME.XML.compsets CIME.XML.entry_id CIME.XML.env_archive CIME.XML.env_base CIME.XML.env_batch CIME.XML.env_build CIME.XML.env_case CIME.XML.env_mach_pes CIME.XML.env_mach_specific CIME.XML.env_run CIME.XML.env_test CIME.XML.env_workflow CIME.XML.expected_fails_file CIME.XML.files CIME.XML.generic_xml CIME.XML.grids CIME.XML.headers CIME.XML.inputdata CIME.XML.machines CIME.XML.namelist_definition CIME.XML.pes CIME.XML.pio CIME.XML.standard_module_setup CIME.XML.stream CIME.XML.test_reporter CIME.XML.testlist CIME.XML.tests CIME.XML.testspec CIME.XML.workflow Tools Tools.standard_script_setup

month() (CIME.date.date method)

N

name() (CIME.XML.generic_xml.GenericXML method) Namelist (class in CIME.namelist) namelist files NamelistDefinition (class in CIME.XML.namelist_definition) NamelistGenerator (class in CIME.nmlgen)

NCK (class in CIME.SystemTests.nck) NCR (class in CIME.SystemTests.ncr) new_instance() (CIME.nmlgen.NamelistGenerator method) new_lid() (in module CIME.utils) NODEFAIL (class in CIME.SystemTests.nodefail) normalize_case_id() (in module CIME.utils)

O

output_line() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions static method)

overwrite_existing_entries() (CIME.XML.entry_id.EntryID method)

P

parse() (in module CIME.namelist) parse_args_and_handle_standard_logging_options() (in module CIME.utils) parse_input() (in module CIME.buildlib) (in module CIME.buildnml) parse_test_name() (in module CIME.utils) PEA (class in CIME.SystemTests.pea) PEM (class in CIME.SystemTests.pem) Pes (class in CIME.XML.pes) PET (class in CIME.SystemTests.pet) PFS (class in CIME.SystemTests.pfs) phase_statuses_dump() (CIME.test_status.TestStatus method) PIO (class in CIME.XML.pio)

pop() (CIME.XML.generic_xml.GenericXML method) populate() (CIME.XML.env_mach_specific.EnvMachSpecific method) PossibleValues (class in CIME.BuildTools.possiblevalues) post_build() (in module CIME.build) PRE (class in CIME.SystemTests.pre) print_values() (CIME.XML.component.Component method) (CIME.XML.compsets.Compsets method) (CIME.XML.grids.Grids method) (CIME.XML.machines.Machines method) (CIME.XML.tests.Tests method) probe_machine_name() (CIME.XML.machines.Machines method) proxy (CIME.XML.namelist_definition.CaseInsensitiveDict attribute) push2testdb() (CIME.XML.test_reporter.TestReporter method)

Q

queue_meets_spec() (CIME.XML.env_batch.EnvBatch method)

quote_string() (CIME.nmlgen.NamelistGenerator static method)

R

read() (CIME.XML.generic_xml.GenericXML method) read_fd() (CIME.XML.generic_xml.GenericXML method) read_xml() (CIME.case.case.Case method) redirect_logger() (in module CIME.utils) redirect_stderr() (in module CIME.utils) redirect_stdout() (in module CIME.utils) redirect_stdout_stderr() (in module CIME.utils) regression test remove_child() (CIME.XML.generic_xml.GenericXML method) rename_all_hist_files() (in module CIME.hist_utils) REP (class in CIME.SystemTests.rep) report_job_status() (CIME.case.case.Case method) reset_cime_config() (in module CIME.utils) resolution resolve_mail_type_args() (in module CIME.utils) restart files RestartTest (class in CIME.SystemTests.restart_tests) restore_from_archive() (CIME.case.case.Case method) (in module CIME.case.case_st_archive) return_values() (CIME.XML.component.Component method) (CIME.XML.machines.Machines method) root() (CIME.XML.generic_xml.GenericXML.CacheEntry property) rpointer files run directory (RUNDIR) run() (CIME.SystemTests.system_tests_common.SystemTestsCommon method) run_and_log_case_status() (in module CIME.utils) run_bld_cmd_ensure_logging() (in module CIME.utils)

run_cmd() (in module CIME.utils) run_cmd_no_fail() (in module CIME.utils) run_gmake() (in module CIME.buildlib) run_indv() (CIME.SystemTests.system_tests_common.FakeTest method) (CIME.SystemTests.system_tests_common.SystemTestsCommon method) (CIME.tests.SystemTests.test_system_tests_compare_two.SystemTestsCompareTwoFake method) run_phase() (CIME.SystemTests.dae.DAE method) (CIME.SystemTests.eri.ERI method) (CIME.SystemTests.erio.ERIO method) (CIME.SystemTests.ers.ERS method) (CIME.SystemTests.ers2.ERS2 method) (CIME.SystemTests.ert.ERT method) (CIME.SystemTests.funit.FUNIT method) (CIME.SystemTests.hommebaseclass.HommeBase method) (CIME.SystemTests.icp.ICP method) (CIME.SystemTests.ldsta.LDSTA method) (CIME.SystemTests.nodefail.NODEFAIL method) (CIME.SystemTests.pfs.PFS method) (CIME.SystemTests.pre.PRE method) (CIME.SystemTests.system_tests_common.SystemTestsCommon method) (CIME.SystemTests.system_tests_common.TESTRUNFAILEXC method) (CIME.SystemTests.system_tests_common.TESTRUNUSERXMLCHANGE method) (CIME.SystemTests.system_tests_common.TESTTESTDIFF method) (CIME.SystemTests.system_tests_compare_two.SystemTestsCompareTwo method) run_phase_get_clone_name() (CIME.XML.env_test.EnvTest method) run_sub_or_cmd() (in module CIME.utils) run_tests() (CIME.test_scheduler.TestScheduler method)

S

safe_copy() (in module CIME.utils) safe_recursive_copy() (in module CIME.utils) sandbox (SRCROOT) save_all_env_info() (CIME.XML.env_mach_specific.EnvMachSpecific method) save_build_provenance() (in module CIME.provenance) save_postrun_provenance() (in module CIME.provenance) save_prerun_provenance() (in module CIME.provenance) save_test_success() (in module CIME.provenance) save_test_time() (in module CIME.provenance) scan_child() (CIME.XML.generic_xml.GenericXML method) scan_children() (CIME.XML.env_base.EnvBase method) (CIME.XML.generic_xml.GenericXML method) scan_optional_child() (CIME.XML.generic_xml.GenericXML method) second() (CIME.date.date method) second_of_day() (CIME.date.date method) second_to_hms() (CIME.date.date static method) select_best_queue() (CIME.XML.env_batch.EnvBatch method) SEQ (class in CIME.SystemTests.seq) set() (CIME.XML.generic_xml.GenericXML method) set_abs_file_path() (CIME.nmlgen.NamelistGenerator method) set_batch_system() (CIME.XML.batch.Batch method) (CIME.XML.env_batch.EnvBatch method) set_batch_system_type() (CIME.XML.env_batch.EnvBatch method) set_comp_classes() (CIME.case.case.Case method) set_compiler() (CIME.XML.compilers.Compilers method) set_components() (CIME.XML.env_base.EnvBase method) set_default_value() (CIME.XML.entry_id.EntryID method) set_element_text() (CIME.XML.generic_xml.GenericXML method) set_exeroot() (CIME.tests.case_fake.CaseFake method) set_file() (CIME.case.case.Case method) set_header() (CIME.XML.testspec.TestSpec method) set_initial_test_values() (CIME.case.case.Case method) set_initial_values() (CIME.XML.env_test.EnvTest method) set_job_defaults() (CIME.XML.env_batch.EnvBatch method) set_last_core_phase_to_fail() (CIME.tests.test_cs_status.TestCsStatus method) set_logger_indent() (in module CIME.utils) set_lookup_value() (CIME.case.case.Case method) set_machine() (CIME.XML.machines.Machines method) set_model() (in module CIME.utils) set_model_version() (CIME.case.case.Case method) set_name() (CIME.XML.generic_xml.GenericXML method) set_nodes() (CIME.XML.namelist_definition.NamelistDefinition method) set_phase_to_status() (CIME.tests.test_cs_status.TestCsStatus static method) set_rundir() (CIME.tests.case_fake.CaseFake method) set_status() (CIME.test_status.TestStatus method) set_test_parameter() (CIME.XML.env_test.EnvTest method) set_text() (CIME.XML.generic_xml.GenericXML method) set_up_signal_handlers() (in module CIME.wait_for_tests) set_valid_values() (CIME.case.case.Case method) (CIME.XML.entry_id.EntryID method) set_value() (CIME.case.case.Case method) (CIME.nmlgen.NamelistGenerator method) (CIME.tests.case_fake.CaseFake method) (CIME.XML.entry_id.EntryID method) (CIME.XML.env_base.EnvBase method) (CIME.XML.env_batch.EnvBatch method) (CIME.XML.env_mach_pes.EnvMachPes method) (CIME.XML.env_test.EnvTest method) (CIME.XML.env_workflow.EnvWorkflow method) (CIME.XML.files.Files method) (CIME.XML.generic_xml.GenericXML method) (CIME.XML.machines.Machines method) (CIME.XML.namelist_definition.NamelistDefinition method)

set_variable() (CIME.BuildTools.cmakemacroswriter.CMakeMacroWriter method) (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (CIME.BuildTools.makemacroswriter.MakeMacroWriter method) set_variable_value() (CIME.namelist.Namelist method) setUp() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) (CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output.TestLinkToCase2Output method) (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method) (CIME.tests.test_case_fake.TestCaseFake method) (CIME.tests.test_cs_status.TestCsStatus method) (CIME.tests.test_test_status.TestTestStatus method) (CIME.tests.test_user_mod_support.TestUserModSupport method) (CIME.tests.XML.test_expected_fails_file.TestExpectedFailsFile method) setup() (CIME.XML.archive.Archive method) setup_header() (CIME.XML.test_reporter.TestReporter method) setup_standard_logging_options() (in module CIME.utils) setup_test_and_directories() (CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output.TestLinkToCase2Output method) SharedArea (class in CIME.utils) shell_command_strings() (CIME.BuildTools.cmakemacroswriter.CMakeMacroWriter method) (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (CIME.BuildTools.makemacroswriter.MakeMacroWriter method) shouldRaise() (in module CIME.namelist) signal_handler() (in module CIME.wait_for_tests) SMS (class in CIME.SystemTests.sms) source modifications (CASEROOT/SourceMods) split_type_string() (CIME.XML.namelist_definition.NamelistDefinition method) stage_refcase() (CIME.case.case.Case method) (in module CIME.case.check_input_data) start_buffering_output() (in module CIME.utils) start_ifeq() (CIME.BuildTools.cmakemacroswriter.CMakeMacroWriter method) (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (CIME.BuildTools.makemacroswriter.MakeMacroWriter method) stop_buffering_output() (in module CIME.utils) Stream (class in CIME.XML.stream) string_in_list() (in module CIME.utils) string_to_character_literal() (in module CIME.namelist) stringify_bool() (in module CIME.utils) stub component submit() (CIME.case.case.Case method) (in module CIME.case.case_submit) submit_jobs() (CIME.case.case.Case method) (CIME.XML.env_batch.EnvBatch method) SVN (class in CIME.Servers.svn) symlink_force() (in module CIME.utils) SystemTestsCommon (class in CIME.SystemTests.system_tests_common) SystemTestsCompareTwo (class in CIME.SystemTests.system_tests_compare_two) SystemTestsCompareTwoFake (class in CIME.tests.SystemTests.test_system_tests_compare_two) (class in CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output)

T

tag tearDown() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) (CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output.TestLinkToCase2Output method) (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method) (CIME.tests.test_case_fake.TestCaseFake method) (CIME.tests.test_cs_status.TestCsStatus method) (CIME.tests.test_user_mod_support.TestUserModSupport method) (CIME.tests.XML.test_expected_fails_file.TestExpectedFailsFile method) test_append() (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method) test_append_multiple_files() (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method) test_append_without_files_raises_exception() (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method) test_assertCorePhases_missingPhase_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertCorePhases_passes() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertCorePhases_wrongName_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertCorePhases_wrongStatus_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertPhaseAbsent_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertPhaseAbsent_passes() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_withExtra_passes() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_xfailExpected_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_xfailExpected_passes() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_xfailNo_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_xfailNo_passes() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_xfailUnexpected_fails() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_assertStatusOfPhase_xfailUnexpected_passes() (CIME.tests.test_custom_assertions_test_status.TestCustomAssertions method) test_basic() (CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output.TestLinkToCase2Output method) (CIME.tests.test_user_mod_support.TestUserModSupport method) (CIME.tests.XML.test_expected_fails_file.TestExpectedFailsFile method) test_compare_fails() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_compare_passes() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_count_fails() (CIME.tests.test_cs_status.TestCsStatus method) test_create_clone() (CIME.tests.test_case_fake.TestCaseFake method) test_duplicate_includes() (CIME.tests.test_user_mod_support.TestUserModSupport method) test_env_archive() (CIME.case.case.Case method) (in module CIME.case.case_st_archive) test_existing_link() (CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output.TestLinkToCase2Output method) test_expected_fails() (CIME.tests.test_cs_status.TestCsStatus method) test_fails_only() (CIME.tests.test_cs_status.TestCsStatus method) test_include() (CIME.tests.test_user_mod_support.TestUserModSupport method) test_indent_string_multiline() (CIME.tests.test_utils.TestIndentStr method) test_indent_string_singleline() (CIME.tests.test_utils.TestIndentStr method) test_invalid_file() (CIME.tests.XML.test_expected_fails_file.TestExpectedFailsFile method) test_keepexe() (CIME.tests.test_user_mod_support.TestUserModSupport method) test_psdump_corePhasesPass() (CIME.tests.test_test_status.TestTestStatus method) test_psdump_oneCorePhaseFails() (CIME.tests.test_test_status.TestTestStatus method) test_psdump_oneCorePhaseFailsAbsentFromXFails() (CIME.tests.test_test_status.TestTestStatus method) test_psdump_oneCorePhaseFailsInXFails() (CIME.tests.test_test_status.TestTestStatus method) test_psdump_oneCorePhasePassesInXFails() (CIME.tests.test_test_status.TestTestStatus method) test_psdump_skipPasses() (CIME.tests.test_test_status.TestTestStatus method) test_psdump_unexpectedPass_shouldBePresent() (CIME.tests.test_test_status.TestTestStatus method) test_run1_fails() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_run2_fails() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_run_phase_internal_calls() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_run_phase_internal_calls_multisubmit_phase1() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method)

test_run_phase_internal_calls_multisubmit_phase2() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_run_phase_passes() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_same_test_appears_twice() (CIME.tests.XML.test_expected_fails_file.TestExpectedFailsFile method) test_setup() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_setup_case2_exists() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_setup_error() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_setup_separate_builds_sharedlibroot() (CIME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo method) test_single_test() (CIME.tests.test_cs_status.TestCsStatus method) test_st_archive() (CIME.case.case.Case method) (in module CIME.case.case_st_archive) test_to_string() (in module CIME.test_utils) test_two_applications() (CIME.tests.test_user_mod_support.TestUserModSupport method) test_two_tests() (CIME.tests.test_cs_status.TestCsStatus method) TESTBUILDFAIL (class in CIME.SystemTests.system_tests_common) TESTBUILDFAILEXC (class in CIME.SystemTests.system_tests_common) TestCaseFake (class in CIME.tests.test_case_fake) TestCsStatus (class in CIME.tests.test_cs_status) TestCustomAssertions (class in CIME.tests.test_custom_assertions_test_status) TestExpectedFailsFile (class in CIME.tests.XML.test_expected_fails_file) TestIndentStr (class in CIME.tests.test_utils) TestLinkToCase2Output (class in CIME.tests.SystemTests.test_system_tests_compare_two_link_to_case2_output) Testlist (class in CIME.XML.testlist) TESTMEMLEAKFAIL (class in CIME.SystemTests.system_tests_common) TESTMEMLEAKPASS (class in CIME.SystemTests.system_tests_common) TestReporter (class in CIME.XML.test_reporter) TESTRUNDIFF (class in CIME.SystemTests.system_tests_common) TESTRUNDIFFRESUBMIT (class in CIME.SystemTests.system_tests_common) TESTRUNFAIL (class in CIME.SystemTests.system_tests_common) TESTRUNFAILEXC (class in CIME.SystemTests.system_tests_common) TESTRUNPASS (class in CIME.SystemTests.system_tests_common) TESTRUNSLOWPASS (class in CIME.SystemTests.system_tests_common) TESTRUNSTARCFAIL (class in CIME.SystemTests.system_tests_common) TESTRUNUSERXMLCHANGE (class in CIME.SystemTests.system_tests_common) Tests (class in CIME.XML.tests) TestScheduler (class in CIME.test_scheduler) TestSpec (class in CIME.XML.testspec) TestStatus (class in CIME.test_status) TestSystemTestsCompareTwo (class in CIME.tests.SystemTests.test_system_tests_compare_two) TESTTESTDIFF (class in CIME.SystemTests.system_tests_common) TestTestStatus (class in CIME.tests.test_test_status) TestUserModSupport (class in CIME.tests.test_user_mod_support) TestUserNLCopier (class in CIME.tests.SystemTests.test_utils.test_user_nl_utils) text() (CIME.XML.generic_xml.GenericXML method) Timeout (class in CIME.utils) to_cond_trees() (CIME.BuildTools.possiblevalues.PossibleValues method) to_string() (CIME.XML.generic_xml.GenericXML method) Tools module Tools.standard_script_setup module touch() (in module CIME.utils) transform_vars() (in module CIME.utils) tree() (CIME.XML.generic_xml.GenericXML.CacheEntry property)

U

unit testing unlock() (CIME.XML.generic_xml.GenericXML method) unlock_file() (in module CIME.locked_files) update_env() (CIME.case.case.Case method)

update_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method) update_test_status() (CIME.XML.testspec.TestSpec method) user namelist files (CASEROOT/user_nl_*) uses_kokkos() (in module CIME.build)

V

valid_compset() (CIME.case.case.Case method) validate() (CIME.XML.namelist_definition.NamelistDefinition method) validate_timestamp() (CIME.XML.generic_xml.GenericXML method) validate_xml_file() (CIME.XML.generic_xml.GenericXML method) ValueSetting (class in CIME.BuildTools.valuesetting)

variable_string() (CIME.BuildTools.cmakemacroswriter.CMakeMacroWriter method) (CIME.BuildTools.macrowriterbase.MacroWriterBase method) (CIME.BuildTools.makemacroswriter.MakeMacroWriter method) verbatim_success_msg() (in module CIME.utils) verify_chksum() (in module CIME.case.check_input_data)

W

wait_for_test() (in module CIME.wait_for_tests) wait_for_tests() (in module CIME.wait_for_tests) wait_for_tests_impl() (in module CIME.wait_for_tests) wait_for_unlocked() (in module CIME.utils) WGET (class in CIME.Servers.wget) wget_login() (CIME.Servers.wget.WGET class method) Workflow (class in CIME.XML.workflow) write() (CIME.namelist.Namelist method) (CIME.XML.generic_xml.GenericXML method)

write_line() (CIME.BuildTools.macrowriterbase.MacroWriterBase method) write_macros_file() (CIME.XML.compilers.Compilers method) write_modelio_file() (CIME.nmlgen.NamelistGenerator method) write_nuopc() (CIME.namelist.Namelist method) write_nuopc_config_file() (CIME.nmlgen.NamelistGenerator method) write_nuopc_modelio_file() (CIME.nmlgen.NamelistGenerator method) write_out() (CIME.BuildTools.macroconditiontree.MacroConditionTree method) write_output_file() (CIME.nmlgen.NamelistGenerator method) write_seq_maps() (CIME.nmlgen.NamelistGenerator method) write_user_nl_file() (CIME.tests.SystemTests.test_utils.test_user_nl_utils.TestUserNLCopier method)

X

XML files

xml_to_make_variable() (in module CIME.build)

Y

year() (CIME.date.date method)