#!/usr/bin/env python3
import collections
import os
import re
import shutil
import sys
import time
from CIME import utils
from CIME.tests import base
from CIME.case.case import Case
from CIME.XML.env_run import EnvRun
try:
collectionsAbc = collections.abc
except AttributeError:
collectionsAbc = collections
[docs]
class TestCimeCase(base.BaseTestCase):
[docs]
def test_cime_case(self):
casedir = self._create_test(
["--no-build", "TESTRUNPASS_P1.f19_g16_rx1.A"], test_id=self._baseline_name
)
self.assertEqual(type(self.MACHINE.get_value("MAX_TASKS_PER_NODE")), int)
self.assertTrue(
type(self.MACHINE.get_value("PROJECT_REQUIRED")) in [type(None), bool]
)
with Case(casedir, read_only=False) as case:
build_complete = case.get_value("BUILD_COMPLETE")
self.assertFalse(
build_complete,
msg="Build complete had wrong value '%s'" % build_complete,
)
case.set_value("BUILD_COMPLETE", True)
build_complete = case.get_value("BUILD_COMPLETE")
self.assertTrue(
build_complete,
msg="Build complete had wrong value '%s'" % build_complete,
)
case.flush()
build_complete = utils.run_cmd_no_fail(
"./xmlquery BUILD_COMPLETE --value", from_dir=casedir
)
self.assertEqual(
build_complete,
"TRUE",
msg="Build complete had wrong value '%s'" % build_complete,
)
# Test some test properties
self.assertEqual(case.get_value("TESTCASE"), "TESTRUNPASS")
def _batch_test_fixture(self, testcase_name):
if not self.MACHINE.has_batch_system() or self.NO_BATCH:
self.skipTest("Skipping testing user prerequisites without batch systems")
testdir = os.path.join(self._testroot, testcase_name)
if os.path.exists(testdir):
shutil.rmtree(testdir)
args = "--case {name} --script-root {testdir} --compset X --res f19_g16 --handle-preexisting-dirs=r --output-root {testdir}".format(
name=testcase_name, testdir=testdir
)
if self._config.allow_unsupported:
args += " --run-unsupported"
self.run_cmd_assert_result(
"{}/create_newcase {}".format(self.SCRIPT_DIR, args),
from_dir=self.SCRIPT_DIR,
)
self.run_cmd_assert_result("./case.setup", from_dir=testdir)
return testdir
[docs]
def test_cime_case_prereq(self):
testcase_name = "prereq_test"
testdir = self._batch_test_fixture(testcase_name)
with Case(testdir, read_only=False) as case:
if case.get_value("depend_string") is None:
self.skipTest(
"Skipping prereq test, depend_string was not provided for this batch system"
)
job_name = "case.run"
prereq_name = "prereq_test"
batch_commands = case.submit_jobs(
prereq=prereq_name, job=job_name, skip_pnl=True, dry_run=True
)
self.assertTrue(
isinstance(batch_commands, collectionsAbc.Sequence),
"case.submit_jobs did not return a sequence for a dry run",
)
self.assertTrue(
len(batch_commands) > 0,
"case.submit_jobs did not return any job submission string",
)
# The first element in the internal sequence should just be the job name
# The second one (batch_cmd_index) should be the actual batch submission command
batch_cmd_index = 1
# The prerequisite should be applied to all jobs, though we're only expecting one
for batch_cmd in batch_commands:
self.assertTrue(
isinstance(batch_cmd, collectionsAbc.Sequence),
"case.submit_jobs did not return a sequence of sequences",
)
self.assertTrue(
len(batch_cmd) > batch_cmd_index,
"case.submit_jobs returned internal sequences with length <= {}".format(
batch_cmd_index
),
)
self.assertTrue(
isinstance(batch_cmd[1], str),
"case.submit_jobs returned internal sequences without the batch command string as the second parameter: {}".format(
batch_cmd[1]
),
)
batch_cmd_args = batch_cmd[1]
jobid_ident = "jobid"
dep_str_fmt = case.get_env("batch").get_value(
"depend_string", subgroup=None
)
self.assertTrue(
jobid_ident in dep_str_fmt,
"dependency string doesn't include the jobid identifier {}".format(
jobid_ident
),
)
dep_str = dep_str_fmt[: dep_str_fmt.index(jobid_ident)]
prereq_substr = None
while dep_str in batch_cmd_args:
dep_id_pos = batch_cmd_args.find(dep_str) + len(dep_str)
batch_cmd_args = batch_cmd_args[dep_id_pos:]
prereq_substr = batch_cmd_args[: len(prereq_name)]
if prereq_substr == prereq_name:
break
self.assertTrue(
prereq_name in prereq_substr,
"Dependencies added, but not the user specified one",
)
[docs]
def test_cime_case_allow_failed_prereq(self):
testcase_name = "allow_failed_prereq_test"
testdir = self._batch_test_fixture(testcase_name)
with Case(testdir, read_only=False) as case:
depend_allow = case.get_value("depend_allow_string")
if depend_allow is None:
self.skipTest(
"Skipping allow_failed_prereq test, depend_allow_string was not provided for this batch system"
)
job_name = "case.run"
prereq_name = "prereq_allow_fail_test"
depend_allow = depend_allow.replace("jobid", prereq_name)
batch_commands = case.submit_jobs(
prereq=prereq_name,
allow_fail=True,
job=job_name,
skip_pnl=True,
dry_run=True,
)
self.assertTrue(
isinstance(batch_commands, collectionsAbc.Sequence),
"case.submit_jobs did not return a sequence for a dry run",
)
num_submissions = 1
if case.get_value("DOUT_S"):
num_submissions = 2
self.assertTrue(
len(batch_commands) == num_submissions,
"case.submit_jobs did not return any job submission strings",
)
self.assertTrue(depend_allow in batch_commands[0][1])
[docs]
def test_cime_case_st_archive_resubmit(self):
testcase_name = "st_archive_resubmit_test"
testdir = self._batch_test_fixture(testcase_name)
with Case(testdir, read_only=False) as case:
case.case_setup(clean=False, test_mode=False, reset=True)
orig_resubmit = 2
case.set_value("RESUBMIT", orig_resubmit)
case.case_st_archive(resubmit=False)
new_resubmit = case.get_value("RESUBMIT")
self.assertTrue(
orig_resubmit == new_resubmit, "st_archive resubmitted when told not to"
)
case.case_st_archive(resubmit=True)
new_resubmit = case.get_value("RESUBMIT")
self.assertTrue(
(orig_resubmit - 1) == new_resubmit,
"st_archive did not resubmit when told to",
)
[docs]
def test_cime_case_build_threaded_1(self):
casedir = self._create_test(
["--no-build", "TESTRUNPASS_P1x1.f19_g16_rx1.A"],
test_id=self._baseline_name,
)
with Case(casedir, read_only=False) as case:
build_threaded = case.get_value("SMP_PRESENT")
self.assertFalse(build_threaded)
build_threaded = case.get_build_threaded()
self.assertFalse(build_threaded)
case.set_value("FORCE_BUILD_SMP", True)
build_threaded = case.get_build_threaded()
self.assertTrue(build_threaded)
[docs]
def test_cime_case_build_threaded_2(self):
casedir = self._create_test(
["--no-build", "TESTRUNPASS_P1x2.f19_g16_rx1.A"],
test_id=self._baseline_name,
)
with Case(casedir, read_only=False) as case:
build_threaded = case.get_value("SMP_PRESENT")
self.assertTrue(build_threaded)
build_threaded = case.get_build_threaded()
self.assertTrue(build_threaded)
[docs]
def test_cime_case_mpi_serial(self):
casedir = self._create_test(
["--no-build", "TESTRUNPASS_Mmpi-serial_P10.f19_g16_rx1.A"],
test_id=self._baseline_name,
)
with Case(casedir, read_only=True) as case:
# Serial cases should not be using pnetcdf
self.assertEqual(case.get_value("CPL_PIO_TYPENAME"), "netcdf")
# Serial cases should be using 1 task
self.assertEqual(case.get_value("TOTALPES"), 1)
self.assertEqual(case.get_value("NTASKS_CPL"), 1)
[docs]
def test_cime_case_force_pecount(self):
casedir = self._create_test(
[
"--no-build",
"--force-procs=16",
"--force-threads=8",
"TESTRUNPASS.f19_g16_rx1.A",
],
test_id=self._baseline_name,
)
with Case(casedir, read_only=True) as case:
self.assertEqual(case.get_value("NTASKS_CPL"), 16)
self.assertEqual(case.get_value("NTHRDS_CPL"), 8)
[docs]
def test_cime_case_xmlchange_append(self):
casedir = self._create_test(
["--no-build", "TESTRUNPASS_P1x1.f19_g16_rx1.A"],
test_id=self._baseline_name,
)
self.run_cmd_assert_result(
"./xmlchange --id PIO_CONFIG_OPTS --val='-opt1'", from_dir=casedir
)
result = self.run_cmd_assert_result(
"./xmlquery --value PIO_CONFIG_OPTS", from_dir=casedir
)
self.assertEqual(result, "-opt1")
self.run_cmd_assert_result(
"./xmlchange --id PIO_CONFIG_OPTS --val='-opt2' --append", from_dir=casedir
)
result = self.run_cmd_assert_result(
"./xmlquery --value PIO_CONFIG_OPTS", from_dir=casedir
)
self.assertEqual(result, "-opt1 -opt2")
[docs]
def test_cime_case_test_walltime_mgmt_1(self):
if self._config.test_mode == "cesm":
self.skipTest("Skipping walltime test. Depends on E3SM batch settings")
test_name = "ERS.f19_g16_rx1.A"
casedir = self._create_test(
["--no-setup", "--machine=blues", "--non-local", test_name],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME -N --subgroup=case.test --value",
from_dir=casedir,
)
self.assertEqual(result, "00:10:00")
result = self.run_cmd_assert_result(
"./xmlquery JOB_QUEUE -N --subgroup=case.test --value", from_dir=casedir
)
self.assertEqual(result, "biggpu")
[docs]
def test_cime_case_test_walltime_mgmt_2(self):
if self._config.test_mode == "cesm":
self.skipTest("Skipping walltime test. Depends on E3SM batch settings")
test_name = "ERS_P64.f19_g16_rx1.A"
casedir = self._create_test(
["--no-setup", "--machine=blues", "--non-local", test_name],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME -N --subgroup=case.test --value",
from_dir=casedir,
)
self.assertEqual(result, "01:00:00")
result = self.run_cmd_assert_result(
"./xmlquery JOB_QUEUE -N --subgroup=case.test --value", from_dir=casedir
)
self.assertEqual(result, "biggpu")
[docs]
def test_cime_case_test_walltime_mgmt_3(self):
if self._config.test_mode == "cesm":
self.skipTest("Skipping walltime test. Depends on E3SM batch settings")
test_name = "ERS_P64.f19_g16_rx1.A"
casedir = self._create_test(
[
"--no-setup",
"--machine=blues",
"--non-local",
"--walltime=0:10:00",
test_name,
],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME -N --subgroup=case.test --value",
from_dir=casedir,
)
self.assertEqual(result, "00:10:00")
result = self.run_cmd_assert_result(
"./xmlquery JOB_QUEUE -N --subgroup=case.test --value", from_dir=casedir
)
self.assertEqual(result, "biggpu") # Not smart enough to select faster queue
[docs]
def test_cime_case_test_walltime_mgmt_4(self):
if self._config.test_mode == "cesm":
self.skipTest("Skipping walltime test. Depends on E3SM batch settings")
test_name = "ERS_P1.f19_g16_rx1.A"
casedir = self._create_test(
[
"--no-setup",
"--machine=blues",
"--non-local",
"--walltime=2:00:00",
test_name,
],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME -N --subgroup=case.test --value",
from_dir=casedir,
)
self.assertEqual(result, "01:00:00")
result = self.run_cmd_assert_result(
"./xmlquery JOB_QUEUE -N --subgroup=case.test --value", from_dir=casedir
)
self.assertEqual(result, "biggpu")
[docs]
def test_cime_case_test_walltime_mgmt_5(self):
if self._config.test_mode == "cesm":
self.skipTest("Skipping walltime test. Depends on E3SM batch settings")
test_name = "ERS_P1.f19_g16_rx1.A"
casedir = self._create_test(
["--no-setup", "--machine=blues", "--non-local", test_name],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
self.run_cmd_assert_result(
"./xmlchange JOB_QUEUE=slartibartfast -N --subgroup=case.test",
from_dir=casedir,
expected_stat=1,
)
self.run_cmd_assert_result(
"./xmlchange JOB_QUEUE=slartibartfast -N --force --subgroup=case.test",
from_dir=casedir,
)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME -N --subgroup=case.test --value",
from_dir=casedir,
)
self.assertEqual(result, "01:00:00")
result = self.run_cmd_assert_result(
"./xmlquery JOB_QUEUE -N --subgroup=case.test --value", from_dir=casedir
)
self.assertEqual(result, "slartibartfast")
[docs]
def test_cime_case_test_walltime_mgmt_6(self):
if not self._hasbatch:
self.skipTest("Skipping walltime test. Depends on batch system")
test_name = "ERS_P1.f19_g16_rx1.A"
casedir = self._create_test(
["--no-build", test_name],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
self.run_cmd_assert_result(
"./xmlchange JOB_WALLCLOCK_TIME=421:32:11 --subgroup=case.test",
from_dir=casedir,
)
self.run_cmd_assert_result("./case.setup --reset", from_dir=casedir)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME --subgroup=case.test --value",
from_dir=casedir,
)
with Case(casedir) as case:
walltime_format = case.get_value("walltime_format", subgroup=None)
if walltime_format is not None and walltime_format.count(":") == 1:
self.assertEqual(result, "421:32")
else:
self.assertEqual(result, "421:32:11")
[docs]
def test_cime_case_test_walltime_mgmt_7(self):
if not self._hasbatch:
self.skipTest("Skipping walltime test. Depends on batch system")
test_name = "ERS_P1.f19_g16_rx1.A"
casedir = self._create_test(
["--no-build", "--walltime=01:00:00", test_name],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
self.run_cmd_assert_result(
"./xmlchange JOB_WALLCLOCK_TIME=421:32:11 --subgroup=case.test",
from_dir=casedir,
)
self.run_cmd_assert_result("./case.setup --reset", from_dir=casedir)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME --subgroup=case.test --value",
from_dir=casedir,
)
with Case(casedir) as case:
walltime_format = case.get_value("walltime_format", subgroup=None)
if walltime_format is not None and walltime_format.count(":") == 1:
self.assertEqual(result, "421:32")
else:
self.assertEqual(result, "421:32:11")
[docs]
def test_cime_case_test_walltime_mgmt_8(self):
if self._config.test_mode == "cesm":
self.skipTest("Skipping walltime test. Depends on E3SM batch settings")
test_name = "SMS_P25600.f19_g16_rx1.A"
machine, compiler = "theta", "gnu"
casedir = self._create_test(
[
"--no-setup",
"--non-local",
"--machine={}".format(machine),
"--compiler={}".format(compiler),
"--project e3sm",
test_name,
],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
result = self.run_cmd_assert_result(
"./xmlquery JOB_WALLCLOCK_TIME -N --subgroup=case.test --value",
from_dir=casedir,
)
self.assertEqual(result, "09:00:00")
result = self.run_cmd_assert_result(
"./xmlquery JOB_QUEUE -N --subgroup=case.test --value", from_dir=casedir
)
self.assertEqual(result, "default")
[docs]
def test_cime_case_test_custom_project(self):
test_name = "ERS_P1.f19_g16_rx1.A"
# have to use a machine both models know and one that doesn't put PROJECT in any key paths
machine = self._config.test_custom_project_machine
compiler = "gnu"
casedir = self._create_test(
[
"--no-setup",
"--machine={}".format(machine),
"--compiler={}".format(compiler),
"--project=testproj",
test_name,
"--mpilib=mpi-serial",
"--non-local",
],
test_id=self._baseline_name,
env_changes="unset CIME_GLOBAL_WALLTIME &&",
)
result = self.run_cmd_assert_result(
"./xmlquery --non-local --value PROJECT --subgroup=case.test",
from_dir=casedir,
)
self.assertEqual(result, "testproj")
[docs]
def test_create_test_longname(self):
self._create_test(
["SMS.f19_g16.2000_SATM_XLND_SICE_SOCN_XROF_XGLC_SWAV", "--no-build"]
)
[docs]
def test_env_loading(self):
if self._machine != "mappy":
self.skipTest("Skipping env load test - Only works on mappy")
casedir = self._create_test(
["--no-build", "TESTRUNPASS.f19_g16_rx1.A"], test_id=self._baseline_name
)
with Case(casedir, read_only=True) as case:
env_mach = case.get_env("mach_specific")
orig_env = dict(os.environ)
env_mach.load_env(case)
module_env = dict(os.environ)
os.environ.clear()
os.environ.update(orig_env)
env_mach.load_env(case, force_method="generic")
generic_env = dict(os.environ)
os.environ.clear()
os.environ.update(orig_env)
problems = ""
for mkey, mval in module_env.items():
if mkey not in generic_env:
if not mkey.startswith("PS") and mkey != "OLDPWD":
problems += "Generic missing key: {}\n".format(mkey)
elif (
mval != generic_env[mkey]
and mkey not in ["_", "SHLVL", "PWD"]
and not mkey.endswith("()")
):
problems += "Value mismatch for key {}: {} != {}\n".format(
mkey, repr(mval), repr(generic_env[mkey])
)
for gkey in generic_env.keys():
if gkey not in module_env:
problems += "Modules missing key: {}\n".format(gkey)
self.assertEqual(problems, "", msg=problems)
[docs]
def test_case_submit_interface(self):
# the current directory may not exist, so make sure we are in a real directory
os.chdir(os.getenv("HOME"))
sys.path.append(self.TOOLS_DIR)
case_submit_path = os.path.join(self.TOOLS_DIR, "case.submit")
module = utils.import_from_file("case.submit", case_submit_path)
sys.argv = [
"case.submit",
"--batch-args",
"'random_arguments_here.%j'",
"--mail-type",
"fail",
"--mail-user",
"'random_arguments_here.%j'",
]
module._main_func(None, True)
[docs]
def test_xml_caching(self):
casedir = self._create_test(
["--no-build", "TESTRUNPASS.f19_g16_rx1.A"], test_id=self._baseline_name
)
active = os.path.join(casedir, "env_run.xml")
backup = os.path.join(casedir, "env_run.xml.bak")
utils.safe_copy(active, backup)
with Case(casedir, read_only=False) as case:
env_run = EnvRun(casedir, read_only=True)
self.assertEqual(case.get_value("RUN_TYPE"), "startup")
case.set_value("RUN_TYPE", "branch")
self.assertEqual(case.get_value("RUN_TYPE"), "branch")
self.assertEqual(env_run.get_value("RUN_TYPE"), "branch")
with Case(casedir) as case:
self.assertEqual(case.get_value("RUN_TYPE"), "branch")
time.sleep(0.2)
utils.safe_copy(backup, active)
with Case(casedir, read_only=False) as case:
self.assertEqual(case.get_value("RUN_TYPE"), "startup")
case.set_value("RUN_TYPE", "branch")
with Case(casedir, read_only=False) as case:
self.assertEqual(case.get_value("RUN_TYPE"), "branch")
time.sleep(0.2)
utils.safe_copy(backup, active)
case.read_xml() # Manual re-sync
self.assertEqual(case.get_value("RUN_TYPE"), "startup")
case.set_value("RUN_TYPE", "branch")
self.assertEqual(case.get_value("RUN_TYPE"), "branch")
with Case(casedir) as case:
self.assertEqual(case.get_value("RUN_TYPE"), "branch")
time.sleep(0.2)
utils.safe_copy(backup, active)
env_run = EnvRun(casedir, read_only=True)
self.assertEqual(env_run.get_value("RUN_TYPE"), "startup")
with Case(casedir, read_only=False) as case:
self.assertEqual(case.get_value("RUN_TYPE"), "startup")
case.set_value("RUN_TYPE", "branch")
# behind the back detection.
with self.assertRaises(utils.CIMEError):
with Case(casedir, read_only=False) as case:
case.set_value("RUN_TYPE", "startup")
time.sleep(0.2)
utils.safe_copy(backup, active)
with Case(casedir, read_only=False) as case:
case.set_value("RUN_TYPE", "branch")
# If there's no modications within CIME, the files should not be written
# and therefore no timestamp check
with Case(casedir) as case:
time.sleep(0.2)
utils.safe_copy(backup, active)
[docs]
def test_self_build_cprnc(self):
if self.NO_FORTRAN_RUN:
self.skipTest("Skipping fortran test")
if self.TEST_COMPILER and "gpu" in self.TEST_COMPILER:
self.skipTest("Skipping cprnc test for gpu compiler")
testname = "ERS_Ln7.f19_g16_rx1.A"
casedir = self._create_test(
[testname, "--no-build"], test_id=self._baseline_name
)
self.run_cmd_assert_result(
"./xmlchange CCSM_CPRNC=this_is_a_broken_cprnc", from_dir=casedir
)
self.run_cmd_assert_result("./case.build", from_dir=casedir)
self.run_cmd_assert_result("./case.submit", from_dir=casedir)
self._wait_for_tests(self._baseline_name, always_wait=True)
[docs]
def test_case_clean(self):
testname = "ERS_Ln7.f19_g16_rx1.A"
casedir = self._create_test(
[testname, "--no-build"], test_id=self._baseline_name
)
self.run_cmd_assert_result("./case.setup --clean", from_dir=casedir)
self.run_cmd_assert_result("./case.setup --clean", from_dir=casedir)
self.run_cmd_assert_result("./case.setup", from_dir=casedir)